Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10170
Genomic locus:	chr11:117167684-117207076
Size/Length:	39392 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001113488
Gene Symbol:	Sept9
Chromosome:	chr11
TSS:	117193626 (Transcription start site)
TES:	117223639 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:117167684-117207076
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10170

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034249	mSE_10170	chr11	117167684	117171731	4047	1940.73
CM034250	mSE_10170	chr11	117172535	117174487	1952	91.65
CM034251	mSE_10170	chr11	117179135	117183418	4283	1471.84
CM034252	mSE_10170	chr11	117184686	117188958	4272	1052.55
CM034253	mSE_10170	chr11	117192363	117194821	2458	127.8
CM034254	mSE_10170	chr11	117194990	117197215	2225	678.49
CM034255	mSE_10170	chr11	117206149	117207076	927	201.54