Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10171
Genomic locus:	chr9:121240382-121262463
Size/Length:	22081 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_175114
Gene Symbol:	Trak1
Chromosome:	chr9
TSS:	121276075 (Transcription start site)
TES:	121384036 (Transcription end site)
Strand:	+
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:121240382-121262463
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10171

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037606	mSE_10171	chr9	121240382	121244353	3971	2037.69
CM037607	mSE_10171	chr9	121244432	121248183	3751	3100
CM037608	mSE_10171	chr9	121251138	121254387	3249	1214.4
CM037609	mSE_10171	chr9	121256325	121258012	1687	681.37
CM037610	mSE_10171	chr9	121259262	121262463	3201	903.37