Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10172
Genomic locus:	chr1:13060192-13095981
Size/Length:	35789 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001081209
Gene Symbol:	Prdm14
Chromosome:	chr1
TSS:	13103508 (Transcription start site)
TES:	13117244 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:13060192-13095981
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10172

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033288	mSE_10172	chr1	13060192	13061369	1177	347.24
CM033289	mSE_10172	chr1	13061911	13063267	1356	277.73
CM033290	mSE_10172	chr1	13063354	13064410	1056	739.84
CM033291	mSE_10172	chr1	13064789	13065588	799	375.69
CM033292	mSE_10172	chr1	13066400	13067306	906	214.66
CM033293	mSE_10172	chr1	13068972	13071331	2359	676.99
CM033294	mSE_10172	chr1	13073256	13073913	657	102.22
CM033295	mSE_10172	chr1	13073952	13076146	2194	1689.69
CM033296	mSE_10172	chr1	13076219	13076872	653	125.31
CM033297	mSE_10172	chr1	13081865	13082987	1122	257.73
CM033298	mSE_10172	chr1	13083416	13086851	3435	3100
CM033299	mSE_10172	chr1	13092702	13095981	3279	1756.96