Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10173
Genomic locus:	chr7:52702961-52731320
Size/Length:	28359 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010240
Gene Symbol:	Ftl1
Chromosome:	chr7
TSS:	52713313 (Transcription start site)
TES:	52715256 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:52702961-52731320
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10173

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036903	mSE_10173	chr7	52702961	52705699	2738	1378.43
CM036904	mSE_10173	chr7	52710763	52713435	2672	524.66
CM036905	mSE_10173	chr7	52713523	52715041	1518	779.47
CM036906	mSE_10173	chr7	52715398	52718355	2957	3100
CM036907	mSE_10173	chr7	52718645	52719735	1090	215.24
CM036908	mSE_10173	chr7	52720117	52723413	3296	597.68
CM036909	mSE_10173	chr7	52730438	52731320	882	136.9