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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10174
Genomic locus: chr7:152039273-152054811
Size/Length: 15538 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_010202
Gene Symbol: Fgf4
Chromosome: chr7
TSS: 152047290 (Transcription start site)
TES: 152051148 (Transcription end site)
Strand: +
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr7:152039273-152054811
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10174

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037073 mSE_10174 chr7 152039273 152040463 1190 97.95
CM037074 mSE_10174 chr7 152040531 152043877 3346 1518.4
CM037075 mSE_10174 chr7 152043902 152045034 1132 1253.42
CM037076 mSE_10174 chr7 152047222 152051629 4407 3100
CM037077 mSE_10174 chr7 152051647 152054811 3164 1190.97