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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10175
Genomic locus: chr10:79486736-79516153
Size/Length: 29417 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_025554
Gene Symbol: Polr2e
Chromosome: chr10
TSS: 79498697 (Transcription start site)
TES: 79502404 (Transcription end site)
Strand: -
Number of Exons: 7
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr10:79486736-79516153
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10175

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033712 mSE_10175 chr10 79486736 79488511 1775 223.69
CM033713 mSE_10175 chr10 79496391 79498485 2094 454.39
CM033714 mSE_10175 chr10 79502568 79503228 660 146.66
CM033715 mSE_10175 chr10 79503403 79504320 917 134.27
CM033716 mSE_10175 chr10 79506430 79507766 1336 411.4
CM033717 mSE_10175 chr10 79508198 79509236 1038 592.65
CM033718 mSE_10175 chr10 79509240 79512154 2914 513.54
CM033719 mSE_10175 chr10 79512205 79516153 3948 3100