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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10176
Genomic locus: chr1:136430629-136493310
Size/Length: 62681 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_152895
Gene Symbol: Kdm5b
Chromosome: chr1
TSS: 136456754 (Transcription start site)
TES: 136529455 (Transcription end site)
Strand: +
Number of Exons: 27
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:136430629-136493310
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10176

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033465 mSE_10176 chr1 136430629 136431670 1041 304.97
CM033466 mSE_10176 chr1 136431776 136432952 1176 389.77
CM033467 mSE_10176 chr1 136435613 136436335 722 166.75
CM033468 mSE_10176 chr1 136436758 136438220 1462 609.91
CM033469 mSE_10176 chr1 136445944 136447178 1234 557.96
CM033470 mSE_10176 chr1 136451311 136453578 2267 932.88
CM033471 mSE_10176 chr1 136460970 136463340 2370 482.93
CM033472 mSE_10176 chr1 136463895 136465504 1609 630.24
CM033473 mSE_10176 chr1 136465509 136466329 820 255.93
CM033474 mSE_10176 chr1 136466367 136467974 1607 1848.86
CM033475 mSE_10176 chr1 136469210 136470011 801 368.37
CM033476 mSE_10176 chr1 136470963 136471382 419 100
CM033477 mSE_10176 chr1 136471433 136471896 463 168.4
CM033478 mSE_10176 chr1 136477113 136477849 736 165.74
CM033479 mSE_10176 chr1 136480004 136480599 595 177.16
CM033480 mSE_10176 chr1 136492640 136493310 670 271.59