Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10177
Genomic locus:	chr8:73188948-73224380
Size/Length:	35432 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_015816
Gene Symbol:	Lsm4
Chromosome:	chr8
TSS:	73197129 (Transcription start site)
TES:	73202651 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:73188948-73224380
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10177

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037219	mSE_10177	chr8	73188948	73190532	1584	326.76
CM037220	mSE_10177	chr8	73190600	73191507	907	141.95
CM037221	mSE_10177	chr8	73194824	73200563	5739	2907.64
CM037222	mSE_10177	chr8	73202632	73204447	1815	102.22
CM037223	mSE_10177	chr8	73215008	73216770	1762	507.12
CM037224	mSE_10177	chr8	73218907	73222696	3789	1029.92
CM037225	mSE_10177	chr8	73222916	73224380	1464	373.74