Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10179
Genomic locus:	chr15:88536367-88562337
Size/Length:	25970 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001033274
Gene Symbol:	Brd1
Chromosome:	chr15
TSS:	88517464 (Transcription start site)
TES:	88564649 (Transcription end site)
Strand:	-
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:88536367-88562337
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10179

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034787	mSE_10179	chr15	88536367	88540862	4495	3100
CM034788	mSE_10179	chr15	88541072	88543392	2320	950.16
CM034789	mSE_10179	chr15	88543609	88544388	779	137.45
CM034790	mSE_10179	chr15	88551656	88552274	618	108.49
CM034791	mSE_10179	chr15	88552869	88554259	1390	410.45
CM034792	mSE_10179	chr15	88560895	88562337	1442	293.4