Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10180
Genomic locus:	chr4:132060847-132086539
Size/Length:	25692 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_144907
Gene Symbol:	Sesn2
Chromosome:	chr4
TSS:	132048721 (Transcription start site)
TES:	132066371 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:132060847-132086539
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10180

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036165	mSE_10180	chr4	132060847	132063840	2993	991.93
CM036166	mSE_10180	chr4	132064184	132066380	2196	528.44
CM036167	mSE_10180	chr4	132069098	132073047	3949	2270.76
CM036168	mSE_10180	chr4	132073130	132074309	1179	357.09
CM036169	mSE_10180	chr4	132078952	132081594	2642	3100
CM036170	mSE_10180	chr4	132081628	132082459	831	217.9
CM036171	mSE_10180	chr4	132085042	132085825	783	210.06
CM036172	mSE_10180	chr4	132085834	132086539	705	109.34