Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10181
Genomic locus:	chr13:98017456-98068351
Size/Length:	50895 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_007930
Gene Symbol:	Enc1
Chromosome:	chr13
TSS:	98011059 (Transcription start site)
TES:	98022995 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:98017456-98068351
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10181

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034495	mSE_10181	chr13	98017456	98019814	2358	383.1
CM034496	mSE_10181	chr13	98029436	98032792	3356	953.92
CM034497	mSE_10181	chr13	98044759	98047076	2317	463.93
CM034498	mSE_10181	chr13	98050746	98054557	3811	1846.5
CM034499	mSE_10181	chr13	98054736	98055913	1177	166.99
CM034500	mSE_10181	chr13	98060869	98063255	2386	560.17
CM034501	mSE_10181	chr13	98064214	98066668	2454	1896.35
CM034502	mSE_10181	chr13	98066721	98068351	1630	1069.15