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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10183
Genomic locus: chr4:147451373-147477057
Size/Length: 25684 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009642
Gene Symbol: Agtrap
Chromosome: chr4
TSS: 147451169 (Transcription start site)
TES: 147462173 (Transcription end site)
Strand: -
Number of Exons: 5
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:147451373-147477057
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10183

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036291 mSE_10183 chr4 147451373 147453207 1834 400.45
CM036292 mSE_10183 chr4 147456676 147458495 1819 1504.66
CM036293 mSE_10183 chr4 147458514 147464551 6037 3100
CM036294 mSE_10183 chr4 147465107 147466092 985 190.28
CM036295 mSE_10183 chr4 147466271 147467391 1120 191.29
CM036296 mSE_10183 chr4 147475748 147477057 1309 117.07