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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10185
Genomic locus: chr5:65188300-65208273
Size/Length: 19973 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008453
Gene Symbol: Klf3
Chromosome: chr5
TSS: 65194761 (Transcription start site)
TES: 65221368 (Transcription end site)
Strand: +
Number of Exons: 6
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr5:65188300-65208273
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10185

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036372 mSE_10185 chr5 65188300 65189585 1285 270.91
CM036373 mSE_10185 chr5 65193448 65194512 1064 488.28
CM036374 mSE_10185 chr5 65194611 65195942 1331 1186.7
CM036375 mSE_10185 chr5 65196193 65198177 1984 1051.24
CM036376 mSE_10185 chr5 65199157 65204811 5654 3100
CM036377 mSE_10185 chr5 65205213 65206169 956 97.92
CM036378 mSE_10185 chr5 65206620 65208273 1653 121.36