Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10186
Genomic locus:	chr7:87154894-87176451
Size/Length:	21557 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001145999
Gene Symbol:	Zfp710
Chromosome:	chr7
TSS:	87169699 (Transcription start site)
TES:	87237637 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:87154894-87176451
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10186

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036958	mSE_10186	chr7	87154894	87156148	1254	284.44
CM036959	mSE_10186	chr7	87158306	87160889	2583	3100
CM036960	mSE_10186	chr7	87160919	87161724	805	878.82
CM036961	mSE_10186	chr7	87161905	87162622	717	187.19
CM036962	mSE_10186	chr7	87164030	87166061	2031	821.6
CM036963	mSE_10186	chr7	87167980	87171425	3445	1494.01
CM036964	mSE_10186	chr7	87171727	87173128	1401	100.48
CM036965	mSE_10186	chr7	87173418	87175109	1691	391.73
CM036966	mSE_10186	chr7	87175133	87176451	1318	241.95