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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10187
Genomic locus: chr17:45585682-45600214
Size/Length: 14532 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: Gm9104
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr17:45585682-45600214
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10187

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035092 mSE_10187 chr17 45585682 45586825 1143 233.22
CM035093 mSE_10187 chr17 45587604 45588102 498 99.49
CM035094 mSE_10187 chr17 45590469 45592507 2038 2471.87
CM035095 mSE_10187 chr17 45593064 45596046 2982 3100
CM035096 mSE_10187 chr17 45596066 45597584 1518 1639.67
CM035097 mSE_10187 chr17 45597662 45600214 2552 810.5