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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10188
Genomic locus: chr9:20776409-20796588
Size/Length: 20179 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_010333
Gene Symbol: S1pr2
Chromosome: chr9
TSS: 20770395 (Transcription start site)
TES: 20781237 (Transcription end site)
Strand: -
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr9:20776409-20796588
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10188

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037397 mSE_10188 chr9 20776409 20778020 1611 282.45
CM037398 mSE_10188 chr9 20779798 20784244 4446 3100
CM037399 mSE_10188 chr9 20784277 20785096 819 676.44
CM037400 mSE_10188 chr9 20785650 20789124 3474 1009.71
CM037401 mSE_10188 chr9 20789373 20790071 698 101.01
CM037402 mSE_10188 chr9 20791777 20793402 1625 313.64
CM037403 mSE_10188 chr9 20795069 20796588 1519 266.83