Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10189
Genomic locus:	chr19:8753563-8800059
Size/Length:	46496 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001161413
Gene Symbol:	Slc3a2
Chromosome:	chr19
TSS:	8781371 (Transcription start site)
TES:	8797859 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:8753563-8800059
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10189

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035353	mSE_10189	chr19	8753563	8755883	2320	181.8
CM035354	mSE_10189	chr19	8766926	8767891	965	142.94
CM035355	mSE_10189	chr19	8769140	8770587	1447	92.5
CM035356	mSE_10189	chr19	8777314	8778210	896	307.47
CM035357	mSE_10189	chr19	8779552	8780651	1099	335.79
CM035358	mSE_10189	chr19	8780672	8781854	1182	307.09
CM035359	mSE_10189	chr19	8782062	8782850	788	147.74
CM035360	mSE_10189	chr19	8783310	8785634	2324	508.87
CM035361	mSE_10189	chr19	8785945	8789091	3146	1435.49
CM035362	mSE_10189	chr19	8789285	8790204	919	191.99
CM035363	mSE_10189	chr19	8790396	8791292	896	787.7
CM035364	mSE_10189	chr19	8791381	8792162	781	334.32
CM035365	mSE_10189	chr19	8795710	8796305	595	93.77
CM035366	mSE_10189	chr19	8796394	8796996	602	190.62
CM035367	mSE_10189	chr19	8797060	8797785	725	460.9
CM035368	mSE_10189	chr19	8797919	8800059	2140	1169.21