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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10190
Genomic locus: chr12:103940265-103970442
Size/Length: 30177 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_172584
Gene Symbol: Itpk1
Chromosome: chr12
TSS: 103806792 (Transcription start site)
TES: 103943079 (Transcription end site)
Strand: -
Number of Exons: 10
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr12:103940265-103970442
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10190

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034378 mSE_10190 chr12 103940265 103943154 2889 314.89
CM034379 mSE_10190 chr12 103943287 103946812 3525 895.43
CM034380 mSE_10190 chr12 103950891 103952621 1730 926.82
CM034381 mSE_10190 chr12 103952751 103953721 970 234.97
CM034382 mSE_10190 chr12 103957990 103958723 733 274.22
CM034383 mSE_10190 chr12 103960325 103961242 917 163.32
CM034384 mSE_10190 chr12 103967714 103970442 2728 3100