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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10191
Genomic locus: chr1:34115740-34135327
Size/Length: 19587 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001276764
Gene Symbol: Dst
Chromosome: chr1
TSS: 33965069 (Transcription start site)
TES: 34365507 (Transcription end site)
Strand: +
Number of Exons: 103
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:34115740-34135327
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10191

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033300 mSE_10191 chr1 34115740 34116779 1039 212.56
CM033301 mSE_10191 chr1 34121515 34123090 1575 615.84
CM033302 mSE_10191 chr1 34123568 34124919 1351 210.3
CM033303 mSE_10191 chr1 34125186 34126382 1196 189.41
CM033304 mSE_10191 chr1 34126700 34128481 1781 899.09
CM033305 mSE_10191 chr1 34128940 34132274 3334 3100
CM033306 mSE_10191 chr1 34132900 34135327 2427 1865.28