Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10193
Genomic locus:	chr4:140239476-140262729
Size/Length:	23253 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_173867
Gene Symbol:	Rcc2
Chromosome:	chr4
TSS:	140257387 (Transcription start site)
TES:	140279135 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:140239476-140262729
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10193

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036253	mSE_10193	chr4	140239476	140240178	702	154.91
CM036254	mSE_10193	chr4	140240366	140242006	1640	316.02
CM036255	mSE_10193	chr4	140243719	140247978	4259	1109.42
CM036256	mSE_10193	chr4	140248694	140252001	3307	429.45
CM036257	mSE_10193	chr4	140254364	140258268	3904	3100
CM036258	mSE_10193	chr4	140258722	140259716	994	1176.6
CM036259	mSE_10193	chr4	140259772	140261059	1287	241.43
CM036260	mSE_10193	chr4	140261216	140262729	1513	124.85