Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10196
Genomic locus:	chr2:154242623-154257984
Size/Length:	15361 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001285446
Gene Symbol:	Cbfa2t2
Chromosome:	chr2
TSS:	154262219 (Transcription start site)
TES:	154365092 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:154242623-154257984
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10196

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035635	mSE_10196	chr2	154242623	154243584	961	246.51
CM035636	mSE_10196	chr2	154243708	154244491	783	495.1
CM035637	mSE_10196	chr2	154244893	154247157	2264	1268.73
CM035638	mSE_10196	chr2	154247182	154249552	2370	1418.92
CM035639	mSE_10196	chr2	154249616	154255399	5783	3100
CM035640	mSE_10196	chr2	154255422	154256265	843	245.01
CM035641	mSE_10196	chr2	154256297	154256787	490	277.82
CM035642	mSE_10196	chr2	154256997	154257984	987	161.81