Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10200
Genomic locus:	chr15:100076996-100108268
Size/Length:	31272 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_183109
Gene Symbol:	Tmprss12
Chromosome:	chr15
TSS:	100111267 (Transcription start site)
TES:	100123484 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:100076996-100108268
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10200

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034817	mSE_10200	chr15	100076996	100078795	1799	701.34
CM034818	mSE_10200	chr15	100078811	100079927	1116	225.2
CM034819	mSE_10200	chr15	100080714	100082589	1875	454.6
CM034820	mSE_10200	chr15	100086828	100087500	672	139.81
CM034821	mSE_10200	chr15	100087681	100088803	1122	632.03
CM034822	mSE_10200	chr15	100089237	100090329	1092	400.9
CM034823	mSE_10200	chr15	100091644	100093528	1884	568.51
CM034824	mSE_10200	chr15	100093531	100094476	945	2994.71
CM034825	mSE_10200	chr15	100095316	100095722	406	134.03
CM034826	mSE_10200	chr15	100098109	100098509	400	122.46
CM034827	mSE_10200	chr15	100099116	100100414	1298	850.09
CM034828	mSE_10200	chr15	100100482	100101232	750	629.1
CM034829	mSE_10200	chr15	100105579	100107698	2119	2292.02
CM034830	mSE_10200	chr15	100107787	100108268	481	106.17