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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10201
Genomic locus: chr3:90224498-90257055
Size/Length: 32557 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_178876
Gene Symbol: Ints3
Chromosome: chr3
TSS: 90195301 (Transcription start site)
TES: 90237558 (Transcription end site)
Strand: -
Number of Exons: 31
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr3:90224498-90257055
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10201

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035881 mSE_10201 chr3 90224498 90225184 686 178.44
CM035882 mSE_10201 chr3 90233113 90233924 811 114.19
CM035883 mSE_10201 chr3 90236658 90238815 2157 966.18
CM035884 mSE_10201 chr3 90240895 90242286 1391 481.5
CM035885 mSE_10201 chr3 90246998 90249174 2176 472.63
CM035886 mSE_10201 chr3 90249294 90253480 4186 1784.1
CM035887 mSE_10201 chr3 90254241 90257055 2814 1521.6