Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10202
Genomic locus:	chr14:64115623-64132135
Size/Length:	16512 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_021480
Gene Symbol:	Tdh
Chromosome:	chr14
TSS:	64111183 (Transcription start site)
TES:	64127929 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:64115623-64132135
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10202

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034596	mSE_10202	chr14	64115623	64116537	914	177.3
CM034597	mSE_10202	chr14	64116575	64124169	7594	3100
CM034598	mSE_10202	chr14	64124520	64128831	4311	1071.5
CM034599	mSE_10202	chr14	64131284	64132135	851	376.47