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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10204
Genomic locus: chr1:34153533-34173943
Size/Length: 20410 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001276764
Gene Symbol: Dst
Chromosome: chr1
TSS: 33965069 (Transcription start site)
TES: 34365507 (Transcription end site)
Strand: +
Number of Exons: 103
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:34153533-34173943
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10204

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033307 mSE_10204 chr1 34153533 34154962 1429 387.82
CM033308 mSE_10204 chr1 34158589 34162623 4034 3100
CM033309 mSE_10204 chr1 34162686 34163373 687 262.68
CM033310 mSE_10204 chr1 34163398 34164443 1045 2503.93
CM033311 mSE_10204 chr1 34165008 34168556 3548 2777.3
CM033312 mSE_10204 chr1 34170623 34171748 1125 160.17
CM033313 mSE_10204 chr1 34171822 34172505 683 129.03
CM033314 mSE_10204 chr1 34172849 34173943 1094 292.22