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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10205
Genomic locus: chr6:136414413-136449116
Size/Length: 34703 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_019426
Gene Symbol: Atf7ip
Chromosome: chr6
TSS: 136467371 (Transcription start site)
TES: 136555900 (Transcription end site)
Strand: +
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr6:136414413-136449116
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10205

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036727 mSE_10205 chr6 136414413 136415459 1046 172.76
CM036728 mSE_10205 chr6 136416096 136416781 685 185.41
CM036729 mSE_10205 chr6 136416885 136420681 3796 3100
CM036730 mSE_10205 chr6 136423527 136424706 1179 253.01
CM036731 mSE_10205 chr6 136436653 136437435 782 96.13
CM036732 mSE_10205 chr6 136437605 136441417 3812 3100
CM036733 mSE_10205 chr6 136447428 136449116 1688 539.24