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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10206
Genomic locus: chr10:66510696-66571445
Size/Length: 60749 bp
Genome: Mouse -
Cell/Tissue: Embryonic stem cells
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001204915
Gene Symbol: Reep3
Chromosome: chr10
TSS: 65281122 (Transcription start site)
TES: 65384883 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10206

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033647 mSE_10206 chr10 66510696 66511624 928 120.31
CM033648 mSE_10206 chr10 66523846 66525264 1418 645.89
CM033649 mSE_10206 chr10 66531718 66532451 733 93.62
CM033650 mSE_10206 chr10 66532555 66533173 618 145.18
CM033651 mSE_10206 chr10 66541196 66542341 1145 309.35
CM033652 mSE_10206 chr10 66544885 66545951 1066 873.6
CM033653 mSE_10206 chr10 66546017 66547248 1231 604.14
CM033654 mSE_10206 chr10 66558560 66562684 4124 2265.3
CM033655 mSE_10206 chr10 66562741 66563186 445 271.38
CM033656 mSE_10206 chr10 66563418 66564394 976 418.18
CM033657 mSE_10206 chr10 66566650 66568475 1825 226.54
CM033658 mSE_10206 chr10 66568484 66571445 2961 457.3