Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10208
Genomic locus:	chr16:84767906-84786021
Size/Length:	18115 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_023844
Gene Symbol:	Jam2
Chromosome:	chr16
TSS:	84774367 (Transcription start site)
TES:	84826620 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:84767906-84786021
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10208

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034960	mSE_10208	chr16	84767906	84769205	1299	513.07
CM034961	mSE_10208	chr16	84769346	84772071	2725	3100
CM034962	mSE_10208	chr16	84772412	84775562	3150	192.7
CM034963	mSE_10208	chr16	84777465	84778128	663	97.78
CM034964	mSE_10208	chr16	84778225	84781621	3396	3100
CM034965	mSE_10208	chr16	84782028	84782541	513	111.9
CM034966	mSE_10208	chr16	84783231	84783998	767	319.06
CM034967	mSE_10208	chr16	84784635	84785009	374	90.47
CM034968	mSE_10208	chr16	84785392	84786021	629	190.62