Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10209
Genomic locus:	chr3:96363226-96382948
Size/Length:	19722 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001009935
Gene Symbol:	Txnip
Chromosome:	chr3
TSS:	96361879 (Transcription start site)
TES:	96365780 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:96363226-96382948
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10209

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035913	mSE_10209	chr3	96363226	96365744	2518	546.65
CM035914	mSE_10209	chr3	96365773	96369077	3304	409.29
CM035915	mSE_10209	chr3	96373115	96375274	2159	608.03
CM035916	mSE_10209	chr3	96375323	96376921	1598	787.59
CM035917	mSE_10209	chr3	96377057	96378728	1671	176.64
CM035918	mSE_10209	chr3	96378792	96382948	4156	3100