Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10212
Genomic locus:	chr11:5377356-5435479
Size/Length:	58123 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_013842
Gene Symbol:	Xbp1
Chromosome:	chr11
TSS:	5420643 (Transcription start site)
TES:	5425996 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:5377356-5435479
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10212

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033793	mSE_10212	chr11	5377356	5378665	1309	386.11
CM033794	mSE_10212	chr11	5385567	5386169	602	110.29
CM033795	mSE_10212	chr11	5393771	5397302	3531	2048.46
CM033796	mSE_10212	chr11	5397790	5400825	3035	1805.33
CM033797	mSE_10212	chr11	5402131	5403109	978	176.07
CM033798	mSE_10212	chr11	5405092	5406485	1393	745.24
CM033799	mSE_10212	chr11	5415579	5416486	907	113.83
CM033800	mSE_10212	chr11	5420995	5422254	1259	124.4
CM033801	mSE_10212	chr11	5426107	5426914	807	151
CM033802	mSE_10212	chr11	5430641	5431157	516	117.32
CM033803	mSE_10212	chr11	5433106	5433842	736	90.27
CM033804	mSE_10212	chr11	5434550	5435479	929	210.67