Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10213
Genomic locus:	chr6:125426079-125455836
Size/Length:	29757 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_007657
Gene Symbol:	Cd9
Chromosome:	chr6
TSS:	125410283 (Transcription start site)
TES:	125444773 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr6:125426079-125455836
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10213

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036709	mSE_10213	chr6	125426079	125429156	3077	1447.66
CM036710	mSE_10213	chr6	125429172	125431367	2195	783.03
CM036711	mSE_10213	chr6	125431374	125434646	3272	1604.75
CM036712	mSE_10213	chr6	125434736	125435443	707	132.76
CM036713	mSE_10213	chr6	125435466	125436300	834	99.74
CM036714	mSE_10213	chr6	125439464	125441057	1593	542.74
CM036715	mSE_10213	chr6	125441197	125444797	3600	1088.02
CM036716	mSE_10213	chr6	125444842	125445942	1100	367.97
CM036717	mSE_10213	chr6	125453852	125455030	1178	267.72
CM036718	mSE_10213	chr6	125455094	125455836	742	242.3