Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10214
Genomic locus:	chr17:84050508-84108831
Size/Length:	58323 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001171054
Gene Symbol:	Mta3
Chromosome:	chr17
TSS:	84105502 (Transcription start site)
TES:	84192217 (Transcription end site)
Strand:	+
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:84050508-84108831
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10214

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035195	mSE_10214	chr17	84050508	84051136	628	92.17
CM035196	mSE_10214	chr17	84053416	84054985	1569	728.75
CM035197	mSE_10214	chr17	84056549	84057539	990	150.04
CM035198	mSE_10214	chr17	84063419	84065556	2137	1188.62
CM035199	mSE_10214	chr17	84065567	84067645	2078	1502.29
CM035200	mSE_10214	chr17	84067705	84068263	558	284.47
CM035201	mSE_10214	chr17	84076309	84077384	1075	489.97
CM035202	mSE_10214	chr17	84089393	84091419	2026	460.25
CM035203	mSE_10214	chr17	84097968	84100312	2344	250.42
CM035204	mSE_10214	chr17	84104537	84105420	883	141.79
CM035205	mSE_10214	chr17	84105534	84108831	3297	1029.78