Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10215
Genomic locus:	chr11:100122038-100149259
Size/Length:	27221 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_212483
Gene Symbol:	Krt42
Chromosome:	chr11
TSS:	100124195 (Transcription start site)
TES:	100131185 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:100122038-100149259
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10215

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034140	mSE_10215	chr11	100122038	100125137	3099	2002.94
CM034141	mSE_10215	chr11	100132163	100134005	1842	288.1
CM034142	mSE_10215	chr11	100134786	100140807	6021	3100
CM034143	mSE_10215	chr11	100142129	100143924	1795	388.76
CM034144	mSE_10215	chr11	100148020	100149259	1239	191.89