Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10218
Genomic locus:	chr2:75518048-75555173
Size/Length:	37125 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010902
Gene Symbol:	Nfe2l2
Chromosome:	chr2
TSS:	75513575 (Transcription start site)
TES:	75542698 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:75518048-75555173
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10218

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035584	mSE_10218	chr2	75518048	75520141	2093	818.76
CM035585	mSE_10218	chr2	75520522	75522980	2458	3100
CM035586	mSE_10218	chr2	75523349	75526315	2966	1025.77
CM035587	mSE_10218	chr2	75535659	75536305	646	117.38
CM035588	mSE_10218	chr2	75541361	75542680	1319	267.21
CM035589	mSE_10218	chr2	75542895	75544019	1124	465.66
CM035590	mSE_10218	chr2	75544044	75545992	1948	468.43
CM035591	mSE_10218	chr2	75554125	75555173	1048	318.3