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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10219
Genomic locus: chr4:148093391-148126149
Size/Length: 32758 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_027195
Gene Symbol: Casz1
Chromosome: chr4
TSS: 148178500 (Transcription start site)
TES: 148319239 (Transcription end site)
Strand: +
Number of Exons: 16
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:148093391-148126149
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10219

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036297 mSE_10219 chr4 148093391 148094244 853 186.83
CM036298 mSE_10219 chr4 148095380 148099687 4307 2035.64
CM036299 mSE_10219 chr4 148108286 148110234 1948 216.45
CM036300 mSE_10219 chr4 148111175 148115722 4547 3124.93
CM036301 mSE_10219 chr4 148117106 148118052 946 472.26
CM036302 mSE_10219 chr4 148118105 148118883 778 101.83
CM036303 mSE_10219 chr4 148124352 148126149 1797 236.65