Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10220
Genomic locus:	chr12:77975337-78022387
Size/Length:	47050 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_145927
Gene Symbol:	Fntb
Chromosome:	chr12
TSS:	77938453 (Transcription start site)
TES:	78022399 (Transcription end site)
Strand:	+
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:77975337-78022387
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10220

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034316	mSE_10220	chr12	77975337	77976559	1222	468.99
CM034317	mSE_10220	chr12	77984359	77985768	1409	373.33
CM034318	mSE_10220	chr12	77990368	77992128	1760	341.33
CM034319	mSE_10220	chr12	77995599	77997231	1632	415.99
CM034320	mSE_10220	chr12	78000315	78004399	4084	1838.72
CM034321	mSE_10220	chr12	78005488	78006225	737	139.54
CM034322	mSE_10220	chr12	78009514	78010825	1311	262.72
CM034323	mSE_10220	chr12	78010940	78013475	2535	635.27
CM034324	mSE_10220	chr12	78016902	78020278	3376	494.28
CM034325	mSE_10220	chr12	78020517	78022387	1870	463.67