Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10222
Genomic locus:	chr9:62658224-62679370
Size/Length:	21146 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010193
Gene Symbol:	Fem1b
Chromosome:	chr9
TSS:	62639635 (Transcription start site)
TES:	62659455 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:62658224-62679370
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10222

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037500	mSE_10222	chr9	62658224	62661628	3404	987.06
CM037501	mSE_10222	chr9	62665224	62666802	1578	186.16
CM037502	mSE_10222	chr9	62667001	62667672	671	100.5
CM037503	mSE_10222	chr9	62667684	62668398	714	116.67
CM037504	mSE_10222	chr9	62671662	62679370	7708	3100