Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10223
Genomic locus:	chr7:80661465-80707365
Size/Length:	45900 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001081345
Gene Symbol:	Chd2
Chromosome:	chr7
TSS:	80571537 (Transcription start site)
TES:	80686632 (Transcription end site)
Strand:	-
Number of Exons:	39
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:80661465-80707365
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10223

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036928	mSE_10223	chr7	80661465	80662105	640	224.38
CM036929	mSE_10223	chr7	80662282	80663063	781	727.66
CM036930	mSE_10223	chr7	80663464	80664652	1188	201.07
CM036931	mSE_10223	chr7	80669375	80670271	896	699.13
CM036932	mSE_10223	chr7	80675484	80676019	535	125.48
CM036933	mSE_10223	chr7	80676245	80677085	840	148.52
CM036934	mSE_10223	chr7	80677727	80679135	1408	709.73
CM036935	mSE_10223	chr7	80679646	80681160	1514	1084.77
CM036936	mSE_10223	chr7	80681850	80682721	871	402.52
CM036937	mSE_10223	chr7	80682894	80683482	588	263.08
CM036938	mSE_10223	chr7	80685235	80685982	747	266.4
CM036939	mSE_10223	chr7	80686086	80686976	890	1017.58
CM036940	mSE_10223	chr7	80691457	80691888	431	92.16
CM036941	mSE_10223	chr7	80701627	80704994	3367	817.4
CM036942	mSE_10223	chr7	80705615	80706092	477	117.35
CM036943	mSE_10223	chr7	80706109	80707365	1256	364.95