Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10226
Genomic locus:	chr1:158578274-158600558
Size/Length:	22284 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_023141
Gene Symbol:	Tor3a
Chromosome:	chr1
TSS:	158583747 (Transcription start site)
TES:	158604470 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:158578274-158600558
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10226

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033515	mSE_10226	chr1	158578274	158579796	1522	334.02
CM033516	mSE_10226	chr1	158582331	158583183	852	116.63
CM033517	mSE_10226	chr1	158583683	158588706	5023	1069.98
CM033518	mSE_10226	chr1	158589644	158591967	2323	1071.44
CM033519	mSE_10226	chr1	158593054	158593944	890	225.87
CM033520	mSE_10226	chr1	158596711	158600558	3847	2630.77