Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10227
Genomic locus:	chr17:34029149-34049514
Size/Length:	20365 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_007829
Gene Symbol:	Daxx
Chromosome:	chr17
TSS:	34046389 (Transcription start site)
TES:	34052535 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:34029149-34049514
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10227

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035067	mSE_10227	chr17	34029149	34029946	797	291.4
CM035068	mSE_10227	chr17	34035284	34036058	774	152.29
CM035069	mSE_10227	chr17	34036190	34036496	306	116.87
CM035070	mSE_10227	chr17	34036585	34041407	4822	3100
CM035071	mSE_10227	chr17	34043219	34044576	1357	657.5
CM035072	mSE_10227	chr17	34044631	34046251	1620	1207.18
CM035073	mSE_10227	chr17	34046356	34047878	1522	336.96
CM035074	mSE_10227	chr17	34047949	34049514	1565	260.49