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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10228
Genomic locus: chr2:59440573-59473261
Size/Length: 32688 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001290659
Gene Symbol: Tanc1
Chromosome: chr2
TSS: 59484825 (Transcription start site)
TES: 59684270 (Transcription end site)
Strand: +
Number of Exons: 26
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr2:59440573-59473261
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10228

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035550 mSE_10228 chr2 59440573 59441041 468 106.28
CM035551 mSE_10228 chr2 59441350 59442009 659 130.73
CM035552 mSE_10228 chr2 59449073 59450729 1656 400.65
CM035553 mSE_10228 chr2 59454368 59455095 727 109.01
CM035554 mSE_10228 chr2 59459794 59461033 1239 401.71
CM035555 mSE_10228 chr2 59461060 59462728 1668 709.44
CM035556 mSE_10228 chr2 59464336 59469695 5359 1914.79
CM035557 mSE_10228 chr2 59470448 59473261 2813 3100