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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10229
Genomic locus: chr7:80747340-80773159
Size/Length: 25819 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NR_033604
Gene Symbol: Gm4971
Chromosome: chr7
TSS: 80830377 (Transcription start site)
TES: 80831449 (Transcription end site)
Strand: -
Number of Exons: 1
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr7:80747340-80773159
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10229

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036944 mSE_10229 chr7 80747340 80747990 650 221.29
CM036945 mSE_10229 chr7 80750482 80751256 774 363.72
CM036946 mSE_10229 chr7 80751258 80752906 1648 510.32
CM036947 mSE_10229 chr7 80759268 80760341 1073 1292.62
CM036948 mSE_10229 chr7 80760446 80766020 5574 3100
CM036949 mSE_10229 chr7 80766696 80768211 1515 496.86
CM036950 mSE_10229 chr7 80768227 80769599 1372 507.01
CM036951 mSE_10229 chr7 80772153 80773159 1006 349.44