Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10230
Genomic locus:	chr2:165963179-165984239
Size/Length:	21060 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_028072
Gene Symbol:	Sulf2
Chromosome:	chr2
TSS:	165899398 (Transcription start site)
TES:	165981183 (Transcription end site)
Strand:	-
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:165963179-165984239
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10230

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035742	mSE_10230	chr2	165963179	165965785	2606	354.94
CM035743	mSE_10230	chr2	165965841	165967846	2005	383.09
CM035744	mSE_10230	chr2	165967878	165970316	2438	237.44
CM035745	mSE_10230	chr2	165977987	165984239	6252	3100