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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10234
Genomic locus: chr11:88791860-88814866
Size/Length: 23006 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_029023
Gene Symbol: Scpep1
Chromosome: chr11
TSS: 88785333 (Transcription start site)
TES: 88816756 (Transcription end site)
Strand: -
Number of Exons: 13
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:88791860-88814866
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10234

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034033 mSE_10234 chr11 88791860 88792802 942 187.93
CM034034 mSE_10234 chr11 88792808 88794016 1208 725.4
CM034035 mSE_10234 chr11 88794332 88795583 1251 253.15
CM034036 mSE_10234 chr11 88798409 88799866 1457 774.67
CM034037 mSE_10234 chr11 88802218 88804156 1938 413.06
CM034038 mSE_10234 chr11 88807780 88808951 1171 129.96
CM034039 mSE_10234 chr11 88809132 88814866 5734 3100