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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10237
Genomic locus: chr1:134158899-134190168
Size/Length: 31269 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_144810
Gene Symbol: Klhdc8a
Chromosome: chr1
TSS: 134195202 (Transcription start site)
TES: 134203934 (Transcription end site)
Strand: +
Number of Exons: 5
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:134158899-134190168
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10237

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033444 mSE_10237 chr1 134158899 134159918 1019 321.44
CM033445 mSE_10237 chr1 134160134 134162417 2283 3100
CM033446 mSE_10237 chr1 134162468 134166858 4390 2264.67
CM033447 mSE_10237 chr1 134177315 134179364 2049 511.7
CM033448 mSE_10237 chr1 134183954 134185513 1559 150.68
CM033449 mSE_10237 chr1 134187472 134190168 2696 512.87