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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10238
Genomic locus: chr14:56441386-56488123
Size/Length: 46737 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001040072
Gene Symbol: Nynrin
Chromosome: chr14
TSS: 56472951 (Transcription start site)
TES: 56493573 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr14:56441386-56488123
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10238

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034588 mSE_10238 chr14 56441386 56443548 2162 481.82
CM034589 mSE_10238 chr14 56448400 56449796 1396 138.94
CM034590 mSE_10238 chr14 56449878 56450962 1084 190.24
CM034591 mSE_10238 chr14 56452940 56455269 2329 1041.54
CM034592 mSE_10238 chr14 56459249 56460046 797 117.72
CM034593 mSE_10238 chr14 56468808 56474870 6062 2462.56
CM034594 mSE_10238 chr14 56482026 56482805 779 94.35
CM034595 mSE_10238 chr14 56487316 56488123 807 168.94