Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10240
Genomic locus:	chr11:19849556-19890097
Size/Length:	40541 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_033523
Gene Symbol:	Spred2
Chromosome:	chr11
TSS:	19824444 (Transcription start site)
TES:	19922600 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:19849556-19890097
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10240

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033837	mSE_10240	chr11	19849556	19851274	1718	262.32
CM033838	mSE_10240	chr11	19855383	19856238	855	103.75
CM033839	mSE_10240	chr11	19859378	19860550	1172	195.66
CM033840	mSE_10240	chr11	19862129	19864216	2087	181.82
CM033841	mSE_10240	chr11	19864730	19867110	2380	426.88
CM033842	mSE_10240	chr11	19870461	19870930	469	103.69
CM033843	mSE_10240	chr11	19872000	19872548	548	96.5
CM033844	mSE_10240	chr11	19878633	19879974	1341	100.22
CM033845	mSE_10240	chr11	19881842	19883726	1884	421.31
CM033846	mSE_10240	chr11	19883817	19890097	6280	3100