Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10241
Genomic locus:	chr3:129231704-129255755
Size/Length:	24051 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_130450
Gene Symbol:	Elovl6
Chromosome:	chr3
TSS:	129235303 (Transcription start site)
TES:	129341411 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:129231704-129255755
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10241

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035951	mSE_10241	chr3	129231704	129233818	2114	688.05
CM035952	mSE_10241	chr3	129234547	129237511	2964	419.42
CM035953	mSE_10241	chr3	129237824	129240076	2252	425.93
CM035954	mSE_10241	chr3	129240611	129243193	2582	468.46
CM035955	mSE_10241	chr3	129243721	129245145	1424	202.99
CM035956	mSE_10241	chr3	129245343	129247923	2580	1323.84
CM035957	mSE_10241	chr3	129248065	129248609	544	121.66
CM035958	mSE_10241	chr3	129248638	129249550	912	268.82
CM035959	mSE_10241	chr3	129249940	129250462	522	129.22
CM035960	mSE_10241	chr3	129250717	129251425	708	564.06
CM035961	mSE_10241	chr3	129252028	129253266	1238	1270.44
CM035962	mSE_10241	chr3	129253456	129254997	1541	1099.76
CM035963	mSE_10241	chr3	129255036	129255755	719	371.45