Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10242
Genomic locus:	chr2:179953728-179992004
Size/Length:	38276 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001081171
Gene Symbol:	Lama5
Chromosome:	chr2
TSS:	179911077 (Transcription start site)
TES:	179960564 (Transcription end site)
Strand:	-
Number of Exons:	79
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:179953728-179992004
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10242

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035776	mSE_10242	chr2	179953728	179955578	1850	121.96
CM035777	mSE_10242	chr2	179956507	179958266	1759	113.41
CM035778	mSE_10242	chr2	179959966	179960549	583	91.54
CM035779	mSE_10242	chr2	179960686	179961305	619	104.6
CM035780	mSE_10242	chr2	179961428	179963085	1657	290.25
CM035781	mSE_10242	chr2	179968703	179973835	5132	2334.55
CM035782	mSE_10242	chr2	179985715	179987818	2103	973.77
CM035783	mSE_10242	chr2	179989659	179992004	2345	1418.32