Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10243
Genomic locus:	chr5:31925604-31939856
Size/Length:	14252 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_025796
Gene Symbol:	Mrpl33
Chromosome:	chr5
TSS:	31916323 (Transcription start site)
TES:	31925017 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:31925604-31939856
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10243

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036346	mSE_10243	chr5	31925604	31926378	774	144.84
CM036347	mSE_10243	chr5	31928760	31929781	1021	189.5
CM036348	mSE_10243	chr5	31929917	31933918	4001	1724.79
CM036349	mSE_10243	chr5	31934196	31935543	1347	412.05
CM036350	mSE_10243	chr5	31935613	31939856	4243	3100